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All,<br>
<br>
As mentioned in Thomas' email we are wanting to create a "registry"
of all OpenTox resources (services and data), and I have created a
Google spreadsheet to allow us to get this underway (it will likely
be replaced with something better later).<br>
The link did not come through correctly in Thomas' email, so here it
is:<br>
<a class="moz-txt-link-freetext" href="https://docs.google.com/spreadsheets/d/13RlxLQWunwJAvvjPQWDSciokUnZQhz0vCQyMyBt4jNI/edit#gid=0">https://docs.google.com/spreadsheets/d/13RlxLQWunwJAvvjPQWDSciokUnZQhz0vCQyMyBt4jNI/edit#gid=0</a><br>
<br>
If you have any resources that you think relevant please add them to
the sheet.<br>
Also, if you think additional columns/fields would be useful please
add them.<br>
Please help to get something reasonably complete in place in time
for Dublin.<br>
<br>
Thanks<br>
Tim<br>
<br>
<br>
<div class="moz-cite-prefix">On 11/09/2015 20:43, Thomas Exner
wrote:<br>
</div>
<blockquote cite="mid:55F32EDE.3060802@douglasconnect.com"
type="cite">Dear all:
<br>
<br>
And here the summary for working group 1 (APIs) and 4
(deployment).
<br>
<br>
Looking forward to see as many as possible of you in Dublin.
<br>
Thomas
<br>
<br>
<br>
Joint meeting of WG1 + WG4 on 9-SEP-2015
<br>
<br>
WG1 related aspects:
<br>
Discussion will be held in Dublin to condition the APIs towards
large data sets .
<br>
Use of RDF not favoured now, probably will be replaced with JSON
<br>
Main emphasis needs to be on the data structures, what is provided
and not how it is provided. Technical implementation will be
guided by the needs of interchangeable data formats.
<br>
Incorporation of experience from other projects like ToxBank and
eNanoMapper, others have to be identified
<br>
<br>
WG4 related aspects:
<br>
Goals and activities in the Working group overview were agreed.
<br>
A shared google sheet was set up to create an initial directory of
OpenTox services and data (see here). Everyone is encouraged to
fill in relevant information. A better solution would be desirable
in the longer term that facilitated ensuring the information was
kept up to date (e.g. checking if the service is still running,
and stating when the code repository was last updated).
<br>
We do not yet have participants from two of the original OpenTox
developers: Nina Keliazkova’s and Stefan Kramer’s groups.
Including their expertise in the working group activities is
highly desired.
<br>
Yanli Wang from PubChem attended and pointed out the resources at
PubChem. We will want to discuss whether/how to access non-OpenTox
compliant services like these.
<br>
<br>
During the Dublin meeting we will initially combine the working
groups, and break out into separate groups as necessary.
<br>
<br>
<br>
<br>
<blockquote type="cite">Thomas Exner schrieb:
<br>
<blockquote type="cite">Hi all:
<br>
<br>
Please find below the login information for the virtual
meetings:
<br>
OpenTox
<br>
<br>
Please join my meeting from your computer, tablet or
smartphone.
<br>
<a class="moz-txt-link-freetext" href="https://global.gotomeeting.com/join/715561590">https://global.gotomeeting.com/join/715561590</a>
<br>
Password: OpenToxWG
<br>
<br>
<br>
You can also dial in using your phone.
<br>
United States : +1 (914) 339-0034
<br>
<br>
<br>
Access Code: 715-561-590
<br>
<br>
More phone numbers
<br>
Australia : +61 2 6108 4655
<br>
Austria : +43 (0) 7 2088 1403
<br>
Belgium : +32 (0) 28 08 4294
<br>
Canada : +1 (416) 800-9295
<br>
Denmark : +45 (0) 69 91 88 65
<br>
Finland : +358 (0) 942 41 5781
<br>
France : +33 (0) 182 880 459
<br>
Germany : +49 (0) 898 7806 6468
<br>
Italy : +39 0 699 36 98 81
<br>
Netherlands : +31 (0) 208 080 382
<br>
Spain : +34 931 81 6669
<br>
Sweden : +46 (0) 852 503 499
<br>
Switzerland : +41 (0) 435 0167 09
<br>
United Kingdom : +44 (0) 20 3535 0610
<br>
<br>
<br>
<br>
<br>
Thomas Exner schrieb:
<br>
<blockquote type="cite">Dear participants of OpenTox Euro:
<br>
<br>
We have now scheduled the pre-conference virtual meetings to
start the
<br>
working group activities. They will take place
<br>
<br>
Wed. Sep. 9, 3pm CEST for WG2 and WG3
<br>
Wed. Sep. 9, 4pm CEST for WG1 and WG4
<br>
<br>
Please note that we start the working groups completely from
scratch.
<br>
Therefore, contributions of people not yet associated with
OpenTox are
<br>
highly appreciated. We are looking for people interested in
providing
<br>
new services using OpenTox standards and especially
experimentalists
<br>
sharing their views on how to best organize data and make
them
<br>
accessible in the most useful way.
<br>
<br>
Best regards.
<br>
Thomas
<br>
<br>
<br>
<br>
<br>
Thomas Exner schrieb:
<br>
<blockquote type="cite">Dear participants of OpenTox Euro:
<br>
<br>
This is a reminder that the introduction virtual meetings
on the
<br>
opentox
<br>
working groups will be held next week. Please register for
them by
<br>
going
<br>
to the doodles given below.
<br>
<br>
Thank you very much.
<br>
Thomas
<br>
<br>
<br>
Thomas Exner schrieb:
<br>
<blockquote type="cite">Dear participants of OpenTox Euro
2015:
<br>
<br>
One topic of the conference will be the future
activities of the
<br>
OpenTox
<br>
working groups on APIs (WG1), AOPs (WG2), Standards
(WG3), and
<br>
Deployment (WG4) To get a head start, we will organize
virtual
<br>
meetings
<br>
previous to the conference. These meetings will be used
for a general
<br>
introduction and for planning the working group sessions
on Wed. Sept.
<br>
30. I set up two doodles to find the best dates for
these meetings.
<br>
Please put in your availabilities for
<br>
<br>
WG1 and WG4 at <a class="moz-txt-link-freetext" href="http://doodle.com/8p2umzuwvte3z8a2">http://doodle.com/8p2umzuwvte3z8a2</a>
<br>
and for WG2 and WG3 at
<a class="moz-txt-link-freetext" href="http://doodle.com/95ywzf8n2y7f27ry">http://doodle.com/95ywzf8n2y7f27ry</a>
<br>
<br>
If you cannot participate at the virtual meetings but
still be
<br>
interested in the activities of the groups, please
contact me so
<br>
that I
<br>
can send you a summary of the discussions.
<br>
<br>
Best regards.
<br>
Thomas
<br>
<br>
</blockquote>
<br>
</blockquote>
<br>
</blockquote>
<br>
</blockquote>
<br>
</blockquote>
<br>
<br>
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<br>
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</blockquote>
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