[OTDev] Chemical Structure Lookup Service & CACTVS
Vladimir Poroikov vladimir.poroikov at ibmc.msk.ruSun Apr 26 12:38:03 CEST 2009
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Dear Vedrin, dear All, Chemical structure lookup service is developed by Dr.Marc Nicklaus from NIC, with whom I have a collaboration for ~9 years. It is publicly available for about 2 years, and the database is permanently increasing. CACTVS is developed by Wolf-Dietrich Ihlenfeldt (http://www.xemistry.com/), and currently this is the most poweful publicly developed chemical database management system. Kind regards, Vladimir > Dear All, > > I would like to bring to your attention some recent developments around > the > Chemical Structure Lookup Service: > > http://cactus.nci.nih.gov/lookup/ > http://cholla.chemnavigator.com/lookup > > Since quite a while there is a SOAP interface for CSLS available which > mimics > the functionality of the web service. More details about this interface > are > available here: > > http://cactus.nci.nih.gov/lookup/help.html#Q9 > > A quite interesting development is the new RESTful interface for the > Chemical > Structure Lookup Service (the service is still in beta and will be part of > a > new CSLS version). It allows access to any identifier available in CSLS > and to > convert it into another representation, e.g.: > > http://cactus.nci.nih.gov/chemical/structure/CCO/inchikey > > The general format of the URLS are > > http://cactus.nci.nih.gov/chemical/structure/{identifier}/{method} > > Allowed identifier values are: > - SMILES > - Std. InChI/InChIKey (~50 million InChIKeys are available for lookup) > - chemical names (~70 million) > - NCI/CADD Identifier (FICuS, uuuuu) > - RN numbers > > Currently available methods include: > - /smiles > - /inchi > - /inchikey > - /names > - /image > - /ficus > - /ficts > - /uuuuu > > ... and more are expected to come. > > Some further examples: > > http://cactus.nci.nih.gov/chemical/structure/CCO/names > http://cactus.nci.nih.gov/chemical/structure/aspirin/image > http://cactus.nci.nih.gov/chemical/structure/InChIKey=YXFVVABEGXRONW-UHFFFAOYSA-N/smiles > > We have developed and currently we are testing a demo client for this > service. > We have very positive impressions so far. > > Kind regards, > Vedrin > > > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development > Vladimir Poroikov, Prof. Dr. Head of Department for Bioinformatics and Laboratory for Structure-Function Based Drug Design Institute of Biomedical Chemistry of Rus. Acad. Med. Sci. Pogodinskaya Str., 10 Moscow, 119121 Russia Tel: +7 499 246-0920 Fax: +7 499 245-0857
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