[OTDev] statisticsSupported / Algorithm
Christoph Helma helma at in-silico.deWed Dec 16 12:53:44 CET 2009
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Excerpts from Nina Jeliazkova's message of Wed Dec 16 09:25:05 +0100 2009: > Hello All, > >>> - Does the Validation service rely on such functionality, or calculates the > >>> relevant statistics itself ? > >>> > >>> > >> No, here is my (validation) point of view: > >> > >> Prediction models do not calculate prediction statistics on their own, > >> they just make predictions. > >> You can use the validation service to get the RMSE of a regression > >> model on some dataset. The corresponding REST operation is the third > >> command in the API > >> (http://www.opentox.org/dev/apis/api-1.1/Validation). The RMSE as well > >> as other regression statistics are available in the validation object > >> which is returned. > >> > > > > Fabian and I have thought about that and we think that the fact that our > > algorithms expose supported statistics might be due to the fact we > > normally work. Using the same implementation for model building and > > validation. But in OpenTox that is not the case. We have separate > > services for model building and validation. Consequently, the algorithms > > building the model does not have to support any statistics. They are as > > Martin points out correctly calculated in the validation service. The > > only thing that has to be exposed (maybe) is, what kind of statistics > > can be calculated on the predictions. Classification or regression > > stats. > > So in our opinion we could get rid of the "statisticsSupported" stuff. > > We may expose if the algorithm is classification or regression but that > > should be covered by the algorithm ontology. > > > > > Do we all agree to remove "statisticsSupported" field from Algorithm RDF > representation? Agreed. Christoph
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