Dear Helvi,

May you specify better what would like to use the ontology for?
The OWL file is a valid XML file as well, so there shouldn't be a problem
if the mark-up structure is accepted by the application.
If you want to upload compounds or features and calculate
something out of them you need to upload a file with individuals
not the ontology itself.

As for visualisation within Protege you can try Jambalaya plug-in.
Go to Project/Configure menu and check the Jambalaya tab. Then a
new tab will appear in the main frame. There you can drag&drop
from the left sideobjects which need to be visualised.

I hope this helps.

Best,
Iva

helvi.grimm at item.fraunhofer.de wrote:
> Dear Nina, dear Ivelina,
>
> i have a little problem with Protege. How can I convert the owl  to xml 
> files to use these in Repdose? I tried to use the convert- function in 
> Protege, but i couldn't read the converted file in access. Have you any 
> idea how can i do this? The second problem is a little bit smaller, do you 
> know a programme or tool how can i extract the picture from Protege (in 
> addition to screenshot) ?
> It would be nice, if you could help me.
>
> with kindly regards 
> Helvi
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