Chung,
I can not open any of these links.

Best Regards
Erwin L Roggen
Science Manager

Novozymes A/S
Krogshoejvej 36

2880 Bagsvaerd Denmark
Phone: +45 44464220
Mobile: +45 30774220
E-mail: elro at novozymes.com

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-----Original Message-----
From: development-bounces at opentox.org [mailto:development-bounces at opentox.org] On Behalf Of chung
Sent: 29. juli 2010 13:13
To: development at opentox.org
Subject: [OTDev] NTUA WebServices

Dear All,
  I summarize here some curl examples one can use to consume our web
services:

1. Get a list of all available algorithms on the server in various MIME
types
curl -H Accept:text/uri-list http://opentox.ntua.gr:3000/algorithm
curl -H Accept:application/rdf+xml http://opentox.ntua.gr:3000/algorithm
curl -H Accept:application/x-turtle
http://opentox.ntua.gr:3000/algorithm

2. Get the representation of a specific algorithm:
curl -H Accept:application/rdf+xml
http://opentox.ntua.gr:3000/algorithm/mlr

3. Train an MLR model using a dataset resource with respect to some
target attribute:
curl -X POST -d
dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22200
'http://opentox.ntua.gr:3000/algorithm/mlr?username=<YOUR_USERNAME>&password=<YOUR_PASS>' -H Accept:text/uri-list
The above curl command will return a (running) task which upon
completion points to the created model.

4. Create a Domain of Applicability Model using the leverages algorithm.
curl -X POST -d
dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22200
'http://opentox.ntua.gr:3000/algorithm/mlr?username=<YOUR_USERNAME>&password=<YOUR_PASS>' -H Accept:text/uri-list

5. Get a list of all available models on the server:
curl -H Accept:text/uri-list
http://opentox.ntua.gr:3000/model?username=<USRNM>&password=<PASS>

6. POST a dataset to a model to get predictions. For example post the
dataset "http://apps.ideaconsult.net:8080/ambit2/dataset/54" to the
model
"http://opentox.ntua.gr:3000/model/d50e4d97-d903-45a7-aad3-b12568d95b2f" (which is a leverages model).
curl -X POST -d
dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54
http://opentox.ntua.gr:3000/model/d50e4d97-d903-45a7-aad3-b12568d95b2f
This will return a task (in AMBIT)

7. Perform a filtering:
curl -X POST -d filter[]=AttributeCleanup -d filter[]=MVH -d
attribute_type[]=string -d attribute_type[]=nominal -d
dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54
'http://opentox.ntua.gr:3000/algorithm/filter'
This will first remove all nominal and string attributes from the
dataset and then will replace all missing values using the 'means and
modes' method.

8. Status/Monitoring Service:
curl http://opentox.ntua.gr:3000/status -H Accept:text/plain

9. BiBTeX service is available at: http://opentox.ntua.gr:3000/bibtex
Get a list of all avaliable BibTeX entries:  
curl http://opentox.ntua.gr:3000/bibtex?username=<UN>&password=<PW>
Create a BIbTeX entry posting RDF:
curl -X POST --data-binary @/path/to/bibtex.rdf
http://opentox.ntua.gr:3000/bibtex?username=...&password=...
Create a bibtex entry using parameters:
curl -X POST -d bibtype={Article|Book|Conference|Phdthesis|Entry} -d
author=... ...
http://opentox.ntua.gr:3000/bibtex?username=...&password=...
Supported parameters:
abstract,
address,
annotation,
booktitle,
chapter,
copyright,
crossref,
editor,
edition,
journal,
isbn,
issn,
key,
series,
title,
url,
keywords,
year,
volume,
number,
pages

Bibtex entries are available in RDF and text/plain formats. Almost all
of the resources above are also available in text/html format (for
access through a browser) in the latest version which is not deployed
yet.


Best regards,
Pantelis
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