[OTDev] Uploading non-standard datasets
surajit ray mr.surajit.ray at gmail.comWed Sep 29 18:54:10 CEST 2010
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Thanks ... will be looking forward to your tutorial Regards Surajit On 29 September 2010 14:07, Tobias Girschick <tobias.girschick at in.tum.de> wrote: > Hi Pantelis, Surajit, > > you should take a look again at the following graphical overview of OT > components: > http://www.opentox.org/dev/apis/api-1.2/OpentToxResources/view > > Note that a feature does not have to be coupled explicitly to a dataset, > as Pantelis already said. In practice however it will be most of the > time. The coupling of features - compounds - datasets is done with the > DataEntry. You can in fact (we are doing this to create prediction > features in model building) POST a new Feature without a dataset. > HasSource in this case points to the algorithm that created the feature. > > Furthermore, a feature doesn't have to be coupled to a compound. Only > the values the feature takes. > >> To be clear lets consider an example of a Dataset X having 20 >> compounds. I create a feature which will be assigned to Dataset X >> (that is Dataset X will have a property which is this feature). > > Are you talking about features (e.g. substructural features) that are > dependent on the dataset? So the dataset can be considered a parameter > of the feature generation [descriptor calculation] algorithm? In this > case the service will be very similar to our FTM service. I am a > tutorial/documentation document which will be ready by tomorrow, I > guess. This document should make it easier for you. > > > best regards, > Tobias > -- > Dipl.-Bioinf. Tobias Girschick > > Technische Universität München > Institut für Informatik > Lehrstuhl I12 - Bioinformatik > Bolzmannstr. 3 > 85748 Garching b. München, Germany > > Room: MI 01.09.042 > Phone: +49 (89) 289-18002 > Email: tobias.girschick at in.tum.de > Web: http://wwwkramer.in.tum.de/girschick > > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development >
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