[OTDev] R interface for OpenTox services

Om ompandey at gmail.com
Fri Oct 29 22:11:50 CEST 2010


Hi,

I found a paper (http://www.jstatsoft.org/v25/i05/supp/2), which might me
interesting for parsing RDF in R. The package "tm" can be used for parsing
RSS feed RDF from Gmane.

Excerpt from paper
--------------------------------------
One key format is RDF (Manola and Miller 2004) where efforts to handle this
format have already been made in R (R Development Core Team 2007) with the
Bioconductor project (Gentleman et al. 2004, 2005). This development off ers
great  exibility in document exchange. But with the growing popularity of
XML based formats (e.g., RDF/XML as a common representation for RDF) tools
need to be able to handle XML documents and metadata.
---------------------------------------

Thanks
om

On Fri, Oct 29, 2010 at 6:42 PM, Nina Jeliazkova
<jeliazkova.nina at gmail.com>wrote:

> On 29 October 2010 15:52, Egon Willighagen <egon.willighagen at gmail.com
> >wrote:
>
> > On Fri, Oct 29, 2010 at 2:42 PM, Nina Jeliazkova
> > <jeliazkova.nina at gmail.com> wrote:
> > > If there are no R RDF packages, perhaps a C RDF library could be used ?
> >  R
> > > seems to be able to use different languages easily.
> >
> > I you find an answer, to can answer my question about it on BioStar:
> >
> >
> >
> http://biostar.stackexchange.com/questions/2069/how-do-i-import-rdf-data-into-r
> >
> > :)
> >
> >
> I've found this note interesting ...
>
> http://www.biostat.harvard.edu/~carey/hbsfin.html<http://www.biostat.harvard.edu/%7Ecarey/hbsfin.html>
>
> Nina
>
> Egon
> >
> >
> > --
> > Dr E.L. Willighagen
> > Postdoctoral Research Associate
> > University of Cambridge
> > Homepage: http://egonw.github.com/
> > LinkedIn: http://se.linkedin.com/in/egonw
> > Blog: http://chem-bla-ics.blogspot.com/
> > PubList: http://www.citeulike.org/user/egonw/tag/papers
> > _______________________________________________
> > Development mailing list
> > Development at opentox.org
> > http://www.opentox.org/mailman/listinfo/development
> >
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