[OTDev] Descriptor Calculation GUI

chung chvng at mail.ntua.gr
Fri Dec 17 19:43:51 CET 2010


Hi Tobias,
   I'll be the first to report a bug... sorry! Well, I tried the GUI
with the dataset
http://apps.ideaconsult.net:8080/ambit2/dataset/54?max=5 which returned
the task:
http://apps.ideaconsult.net:8080/ambit2/task/76dbd7ca-2f91-4151-b46f-2a1de44121ba which after about 5 minutes threw an exception with message:

Error when trying to copy the dataset at
http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/task/fc722c23-c6b0-4ab0-a6c3-5991829fd0f2. Is this OpenTox dataset URI?

(I attach the details of the error report). It seems that AMBIT services
expect a dataset (status code 200) but a task is returned instead
(status 201). Before some time I had observed some problems with the
status codes from TUMs services through ToxOtis so by the way we can
also tackle the issue
https://github.com/alphaville/ToxOtis/issues#issue/19 .

On Fri, 2010-12-17 at 18:50 +0100, Tobias Girschick wrote:

> Hello All,
> 
> A first version of our TUM OpenTox descriptor calculation GUI is 
> available on the web:
> 
> http://opentox-dev.informatik.tu-muenchen.de:8080/OpenToxGUI
> 
> It still has reduced functionality nearly no error handling and for sure 
> some bugs and known issues, but feel free to test the initial version. I 
> would be glad for feedback, especially concerning the handling, not so 
> much the functionality (as this is still limited due to the early 
> development stage).
> 
> I will be on holiday next week, so I wish you all Merry Christmas.
> 

Have a nice time :-) Merry Christmas to you too!

Best wishes,
Pantelis


> Best Regards,
> Tobias
> 


-------------- next part --------------
java.lang.Exception: Remote reference http://apps.ideaconsult.net:8080/ambit2 http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/task/fc722c23-c6b0-4ab0-a6c3-5991829fd0f2
at ambit2.rest.task.CallableQueryProcessor.getQueryObject(CallableQueryProcessor.java:145)
at ambit2.rest.task.CallableQueryResultsCreator.call(CallableQueryResultsCreator.java:102)
at ambit2.rest.task.CallableQueryResultsCreator.call(CallableQueryResultsCreator.java:94)
at ambit2.rest.task.CallableQueryResultsCreator.call(CallableQueryResultsCreator.java:33)
at ambit2.rest.dataset.DatasetResource.copyDatasetToQueryResultsTable(DatasetResource.java:232)
at ambit2.rest.dataset.DatasetResource.put(DatasetResource.java:290)
at org.restlet.resource.ServerResource.doHandle(ServerResource.java:513)
at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:579)
at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:258)
at org.restlet.resource.ServerResource.handle(ServerResource.java:818)
at org.restlet.resource.Finder.handle(Finder.java:516)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Router.doHandle(Router.java:396)
at org.restlet.routing.Router.handle(Router.java:612)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Router.doHandle(Router.java:396)
at org.restlet.routing.Router.handle(Router.java:612)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:152)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.engine.ChainHelper.handle(ChainHelper.java:111)
at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:72)
at org.restlet.Application.handle(Application.java:400)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Router.doHandle(Router.java:396)
at org.restlet.routing.Router.handle(Router.java:612)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Router.doHandle(Router.java:396)
at org.restlet.routing.Router.handle(Router.java:612)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:152)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.routing.Filter.doHandle(Filter.java:156)
at org.restlet.routing.Filter.handle(Filter.java:203)
at org.restlet.engine.ChainHelper.handle(ChainHelper.java:111)
at org.restlet.Component.handle(Component.java:382)
at org.restlet.Server.handle(Server.java:400)
at org.restlet.engine.ServerHelper.handle(ServerHelper.java:71)
at org.restlet.engine.http.HttpServerHelper.handle(HttpServerHelper.java:149)
at org.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:1013)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:151)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:129)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
at org.apache.coyote.http11.Http11NioProcessor.process(Http11NioProcessor.java:886)
at org.apache.coyote.http11.Http11NioProtocol$Http11ConnectionHandler.process(Http11NioProtocol.java:721)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:2256)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:885)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
at java.lang.Thread.run(Thread.java:619)


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