[OTDev] Dataset features in Ontology
Christoph Helma helma at in-silico.chThu Mar 31 12:01:54 CEST 2011
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> Christoph, > > Indeed there are no dataset features registered in the ontology service. We > might register some of course. > > The query I am using in ToxPredict is > > http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas=http%3A%2F%2Fwww.opentox.org%2FechaEndpoints.owl%23AcuteInhalationToxicity > > > or in general : > > http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas=<urlencoded > entry from ECHA endpoints ontology> > > > There is also a set summary queries (recently introduced and not yet > announced on the list), which are not in the API yet , but may be it make > sense to include them somehow and invent RDF serialisation (there is only > text/csv and text/html so far). > > http://apps.ideaconsult.net:8080/ambit2/query/ndatasets_endpoint > > Hope this helps, Thanks, this works as advertised! But how can I decide, which datasets are ready for production use (e.g. to select the four relevant datasets dc:title "Benchmark Data Set for in Silico Prediction of Ames Mutagenicity" ; dc:title "Bursi mutagenicity dataset.sdf" ; dc:title "CPDBAS: Carcinogenic Potency Database Summary Tables - All Species" ; dc:title "ISSCAN: Istituto Superiore di Sanita, CHEMICAL CARCINOGENS: STRUCTURES AND EXPERIMENTAL DATA" ; from 247 mutagenicity datasets), if I do not know titles in advance? I have also observed that the dataset counts from http://apps.ideaconsult.net:8080/ambit2/query/ndatasets_endpoint differ sometimes from the number of datasets retrieved by http://apps.ideaconsult.net:8080/ambit2/dataset?feature_sameas=<echa_entry>. (Acute_toxicity_to_fish_lethality 15 vs 208, Mutagenicity 247 vs 248). Best regards, Christoph
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