[OTDev] OpenTox OpenSource setup SETAC Africa Bioclipse

Roman Affentranger roman at douglasconnect.com
Wed Jun 1 10:27:47 CEST 2011


Dear Egon

You can download the appliance at
http://178.63.47.196/OT_VM/Opentox%20Virtual%20Appliance%20DC.ova
This version is already "patched" with a newer version of the ontology
service (configured to store the tdb database in user tomcat6's home
directory instead of the tomcat temp folder).

Note that the appliance is based on IST's version (
http://www.maunz.de/wordpress/opentox/2011/using-ist-opentox-virtual-appliance-under-windows),
without which I wouldn't have been able to set it up in such a short time
last week. Thanks!

Note, however, that it is work in progress. The hard disk of the appliance
needs to be made bigger, and we plan to add a few more OpenTox services. It
would also be nice to add bioclipse, but I left that out for the moment for
two reasons: 1) disk space, 2) pointing bioclipse to use the local version
of ambit and the ontology service does not persist when restarting bioclipse
(but you know that already). Once that's working with bioclipse we could
integrate it as well.

Best regards,
Roman

On Wed, Jun 1, 2011 at 8:25 AM, Egon Willighagen <egon.willighagen at gmail.com
> wrote:

> On Wed, Jun 1, 2011 at 7:48 AM, Barry Hardy
> <barry.hardy at douglasconnect.com> wrote:
> > #OpenTox #OpenSource setup #SETAC Africa #Bioclipse
> >
> http://barryhardy.blogs.com/theferryman/2011/06/opentox-workshop-setac-africa-day-1.html
>
> Where can people download it?
>
> Egon
>
> --
> Dr E.L. Willighagen
> Postdoctoral Researcher
> Institutet för miljömedicin
> Karolinska Institutet (http://ki.se/imm)
> Homepage: http://egonw.github.com/
> LinkedIn: http://se.linkedin.com/in/egonw
> Blog: http://chem-bla-ics.blogspot.com/
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-- 
Dr. Roman Affentranger
R&D Activity Coordinator
Douglas Connect
Baermeggenweg 14
4314 Zeiningen
Switzerland



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