On 4 October 2013 10:18, Micha Rautenberg <mr at mrautenberg.de> wrote:

> Hi Pantelis,
> Am 04.10.2013 02:14, schrieb Pantelis Sopasakis:
>
>  @Barry: Could you add Philip (in CC) to the development mailing list?
>>
> Philip is already in the development mailing list.
>
>
>> @Philip, All,
>>
>> Some instructions on how to obtain group membership data using the
>> OpenTox A&A API (required authentication):
>>
> I hope this excellent example is already somewhere in our documentation :-)
>

+1

Or perhaps we could start a repository with such examples at
https://github.com/opentox-api ?

Nina


> best, Micha
>
>
>> #Your username:
>> export username=guest
>> $Your password:
>> export password=guest
>> export token=`curl -X POST -k 'https://opensso.in-silico.ch:**
>> 443/auth/authenticate?uri=**service=openldap<https://opensso.in-silico.ch:443/auth/authenticate?uri=service=openldap>'
>> -d username=$username -d password=$password`
>> token=`echo $token | cut -c10-80`;
>> curl -k -v -d name=$username -d attributes_names="group" -d admin=$token
>> https://opensso.in-silico.ch/**opensso/identity/read<https://opensso.in-silico.ch/opensso/identity/read>
>>
>> This will produce an output like this:
>>
>> < HTTP/1.1 200 OK
>> < Server: nginx/0.7.67
>> < Date: Fri, 04 Oct 2013 00:25:35 GMT
>> < Content-Type: text/plain;charset=UTF-8
>> < Connection: keep-alive
>> < Content-Length: 194
>> <
>> identitydetails.name=guest
>> identitydetails.type=user
>> identitydetails.realm=dc=**opensso,dc=java,dc=net
>> identitydetails.group=member
>> identitydetails.attribute=
>> identitydetails.attribute.name**=group
>>
>> A more detailed report is returned by:
>>
>> curl -k -v -d name=$username -d admin=$token
>> https://opensso.in-silico.ch/**opensso/identity/read<https://opensso.in-silico.ch/opensso/identity/read>
>>
>> and finally, logout:
>>
>> curl -i -d subjectid=$token http://opensso.in-silico.ch/**
>> opensso/identity/logout<http://opensso.in-silico.ch/opensso/identity/logout>
>>
>> Best regards,
>> Pantelis
>>
>>
>> On 03/ott/2013, at 14:05, Nina Jeliazkova <jeliazkova.nina at gmail.com>
>> wrote:
>>
>>  Philip,
>>>
>>> Most probably Pantelis is right, this is something related to the group
>>> memberships.  You could check the access rights by yourself via the
>>> OpenTox
>>> AA .
>>>
>>> I am usually using the command line application (this is a library as
>>> well)
>>> in such cases
>>>
>>> http://vedina.github.io/**opentox-aa-cli/#cli.html<http://vedina.github.io/opentox-aa-cli/#cli.html>
>>>
>>> Best regards,
>>> Nina
>>>
>>>
>>> On 3 October 2013 14:57, Philip Doganis <filipposd at gmail.com> wrote:
>>>
>>>  Hello Nina,
>>>>
>>>> Many thanks for your reply.
>>>>
>>>> Earlier today, I was trying to find the source of the problem and I
>>>> logged
>>>> on to the opentox ntua service with my credentials and operated
>>>> successfully! I still get an error when trying to access
>>>> http://opentox.ntua.gr:8080/**user <http://opentox.ntua.gr:8080/user>, but I can access the User Quota Report.
>>>>
>>>> My main goal is to set up the successor of NTUA opentox server and for
>>>> that purpose I am setting it up an another machine.
>>>> While I can construct models using the guest account and someone
>>>> else's, I
>>>> can't do that with mine.
>>>> Pantelis sent a message while I was typing this message, some info can
>>>> be
>>>> found in his e-mail...
>>>>
>>>> Since this is a public forum, I can give more info in a private message.
>>>>
>>>> Thanks for your help.
>>>>
>>>> Best regards,
>>>> Philip
>>>>
>>>> --
>>>> Philip Doganis
>>>> Sent with Sparrow (http://www.sparrowmailapp.**com/?sig<http://www.sparrowmailapp.com/?sig>
>>>> )
>>>>
>>>>
>>>> On Thursday, October 3, 2013 at 2:15 PM, Nina Jeliazkova wrote:
>>>>
>>>>  Dear Philip,
>>>>>
>>>>> This seems to be an error when creating a policy at the OpenSSO server,
>>>>> probably when creating a new model, but this is not explicit in the
>>>>> error
>>>>> log. Do I understand you use the "guest" user, or do you use your own
>>>>> OpenTox user?
>>>>>
>>>>> Micha, could you have a look at the OpenSSO and policy server logs.
>>>>>
>>>>> Thanks,
>>>>> Nina
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 1 October 2013 20:00, Philip Doganis <filipposd at gmail.com (mailto:
>>>>>
>>>> filipposd at gmail.com)> wrote:
>>>>
>>>>> Dear Opentox community,
>>>>>>
>>>>>> My name is Philip Doganis, I am a postgraduate researcher working at
>>>>>>
>>>>> NTUA
>>>>
>>>>> with Prof. Sarimveis.
>>>>>>
>>>>>> I am writing about the problem I encountered in my effort to use the
>>>>>> opentox service. I have created the user filipposd but I am unable to
>>>>>> perform any action, other than receive a token. As a guest user, I can
>>>>>> create and manage models and I have checked my cookie settings (I
>>>>>>
>>>>> accept
>>>>
>>>>> everything). I get this error:
>>>>>> https://gist.github.com/**alphaville/**07536df6f3b8e252832a<https://gist.github.com/alphaville/07536df6f3b8e252832a>.
>>>>>> Please check any problems there might be with my account, so I can
>>>>>> make
>>>>>> use of the services. Thanks in advance for your time.
>>>>>>
>>>>>> Best regards,
>>>>>> Philip Doganis
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Philip Doganis
>>>>>> Sent with Sparrow (http://www.sparrowmailapp.**com/?sig<http://www.sparrowmailapp.com/?sig>
>>>>>> )
>>>>>>
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>>>>>
>>>>>
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