[OpenTox] RDF papers, REST/rdf use within Ambit and OpenTox

[Barry Hardy]

Egon has sent over this summary of interesting papers on RDF just 
published and based on last Autumn's ACS session.

The papers are available in Open Access at http://www.jcheminf.com/

The paper by Nina and Vedrin on Ambit contains a well written 
explanation of the combined use of rdf and REST within the OpenTox 
Framework and APIs.

Barry


As part of a Thematic Series that will come online shortly, a few
papers have appeared summarizing a symposium on RDF technologies in
chemistry (two more to come later), one of which is a paper by Nina et
al. on their OpenTox API implementation.

Editorial
Resource description framework technologies in chemistry
Egon L Willighagen, Martin P Brändle
Journal of Cheminformatics 2011, 3:15 (13 May 2011)

Software
AMBIT RESTful web services: an implementation of the OpenTox
application programming interface
Nina Jeliazkova, Vedrin Jeliazkov
Journal of Cheminformatics 2011, 3:18 (16 May 2011)

Methodology
Semantic Web integration of cheminformatics resources with the SADI 
framework
Leonid L Chepelev, Michel Dumontier
Journal of Cheminformatics 2011, 3:16 (16 May 2011)

Research article
ChemicalTagger: A tool for semantic text-mining in chemistry
Lezan Hawizy, David M. Jessop, Nico Adams, Peter Murray-Rust
Journal of Cheminformatics 2011, 3:17 (16 May 2011)

Preliminary communication
Linked open drug data for pharmaceutical research and development
Matthias Samwald, Anja Jentzsch, Christopher Bouton, Claus Stie
Kallesoe, Egon Willighagen, Janos Hajagos, M Scott Marshall, Eric
Prud'hommeaux, Oktie Hassenzadeh, Elgar Pichler, Susie Stephens
Journal of Cheminformatics 2011, 3:19 (16 May 2011)

Egon

-- Dr E.L. Willighagen Postdoctoral Researcher
Institutet för miljömedicin Karolinska Institutet
(http://ki.se/imm)
Homepage: http://egonw.github.com/
LinkedIn: http://se.linkedin.com/in/egonw
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers