From mr at mrautenberg.de Wed Jan 25 19:49:06 2012 From: mr at mrautenberg.de (Micha Rautenberg) Date: Wed, 25 Jan 2012 19:49:06 +0100 Subject: [OpenTox Ontology] OpenTox Collaborative Protege Server switched to new address and version. Message-ID: <4F204EA2.8000902@mrautenberg.de> Dear All, The OpenTox Collaborative Protege Server is updated to new version 3.4.8 - Server address is changed to protege.opentox.org. Please use Protege software version 3.4.8 to connect to the OpenTox Collaborative Protege Server. (Notice: if you use an older version of Protege it is normally no problem to have several Protege versions install on a single computer.) best regards, Micha Download protege software at (external non OpenTox page) http://protege.stanford.edu/download/protege/3.4/installanywhere/Web_Installers/ OpenTox Collaborative Ontology Development (based on Collaborative Protege): http://www.opentox.org/dev/ontology/collaborative_protege From sylvia.escher at item.fraunhofer.de Wed Jan 25 22:02:27 2012 From: sylvia.escher at item.fraunhofer.de (sylvia.escher at item.fraunhofer.de) Date: Wed, 25 Jan 2012 22:02:27 +0100 Subject: [OpenTox Ontology] AUTO: Sylvia Escher: Out of office Message-ID: Ich werde ab 01.06.2011 nicht im B?ro sein. Ich kehre zur?ck am 31.03.2012. I'm out of office and will have only limited email access. In urgent cases please contact Monika.Batke at item.fraunhofer.de. Hinweis: Dies ist eine automatische Antwort auf Ihre Nachricht "[OpenTox Ontology] OpenTox Collaborative Protege Server switched to new address and version." gesendet am 25/1/12 19:49:06. Diese ist die einzige Benachrichtigung, die Sie empfangen werden, w?hrend diese Person abwesend ist. From barry.hardy at douglasconnect.com Wed May 9 20:41:35 2012 From: barry.hardy at douglasconnect.com (barry.hardy at douglasconnect.com) Date: Wed, 09 May 2012 20:41:35 +0200 Subject: [OpenTox Ontology] Toxicology ontology papers available Message-ID: <63344.1336588895@douglasconnect.com> The following papers are now available from the new issue of Altex: Toxicology ontology perspectives This article provides an overview of some of the leading developments in incorporating ontology into new knowledge-based systems in predictive toxicology. http://www.altex.ch/en/index.html?id=16&aid=3 A toxicology ontology roadmap In this article we lay out the main justifications and needs for ontology development to enable the building of interoperable predictive toxicology systems and services for industry to design and test safer products. http://www.altex.ch/en/index.html?id=16&aid=2 And this article is also just out online describing initial OpenTox ontology work: OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337268/ best regards Barry From barry.hardy at douglasconnect.com Wed Dec 19 13:37:58 2012 From: barry.hardy at douglasconnect.com (Barry Hardy) Date: Wed, 19 Dec 2012 13:37:58 +0100 Subject: [OpenTox Ontology] Toxicology Ontology Perspectives and Roadmap Message-ID: <50D1B526.8010304@douglasconnect.com> Based on an OpenTox : EMBL-EBI Industry Programme Workshop two papers were published this year and are available online in Open Access mode from www.altex.ch: A Toxicology Ontology Roadmap ALTEX 29(2), 129 - 137 (2012) and Toxicology Ontology Perspectives ALTEX 29(2), 139 - 156 (2012) Barry Hardy (Douglas Connect and OpenTox), Gordana Apic (Cambridge Cell Networks), Philip Carthew (Unilever), Dominic Clark (EMBL-EBI), David Cook (AstraZeneca), Ian Dix (AstraZeneca & Pistoia Alliance), Sylvia Escher (Fraunhofer Institute for Toxicology & Experimental Medicine), Janna Hastings (EMBL-EBI), David J. Heard (Novartis), Nina Jeliazkova (Ideaconsult), Philip Judson (Lhasa Ltd.), Sherri Matis-Mitchell (AstraZeneca), Dragana Mitic (Cambridge Cell Networks), Glenn Myatt (Leadscope), Imran Shah (US EPA), Ola Spjuth (University of Uppsala), Olga Tcheremenskaia (Istituto Superiore di Sanit?), Luca Toldo (Merck KGaA), David Watson (Lhasa Ltd.), Andrew White (Unilever), Chihae Yang (Altamira) I will be interested to hear from community members their interest and suggestions in progressing this area. best regards Barry Barry Hardy PhD Director Douglas Connect GmbH Baermeggenweg 14 4314 Zeiningen Switzerland