[OTDev] IBMC services

Alexey alexey.zakharov at ibmc.msk.ru
Tue Nov 3 15:03:03 CET 2009


Dear Joerg,

At present time our server is working.

We used cURL version 7.19.6 ssl and Poster (Mozilla Firefox) for
implementation of following query:

A Linux example call (command line) to retrieve a list of MNA descriptors
for compounds would be:

curl -X GET -H 'Accept:text/uri-list'
http://195.178.207.160:8080/OpenTox/feature/compound/1/feature_definition/MN
A/

For Poster (Mozilla Firefox) using GET method you could be obtained list of
MNA descriptors for compounds:

http://195.178.207.160:8080/OpenTox/feature/compound/1/feature_definition/MN
A/

I send you print screens of Poster and cURL working.

How we understand use of curl command for curl -X POST -d
"dataset_id=http://test.server.com/input.sdf" -H 'Accept:text/xml'
http://opentox.informatik.tu-muenchen.de:8080/OpenTox/algorithm/descriptorca
lculation/physicochemical/CDKPhysChem activate working of XML-parser for
descriptors calculation. Could you write, what does XML-parser initiate for
working of XML algorithm which are located in
http://opentox.informatik.tu-muenchen.de:8080/OpenTox/algorithm/descriptorca
lculation/physicochemical/CDKPhysChem. Is it especial program or may be you
use XML-server for this purpose (I mean executable module is realized in
XML-server)? 

For example, we try to realize such path: curl->php>socket>php>place on
server or user interface

Yours sincerely,
Alexey Zakharov.
 

-----Original Message-----
From: Poroikov V.V. [mailto:vladimir.poroikov at ibmc.msk.ru] 
Sent: Tuesday, November 03, 2009 4:04 PM
To: alexey.zakharov at ibmc.msk.ru; alexey.lagunin at ibmc.msk.ru
Cc: dmitry.filimonov at ibmc.msk.ru
Subject: Fw: [OTDev] IBMC services


----- Original Message ----- 
From: "Joerg Wicker" <joerg.wicker at in.tum.de>
To: "opentox development mailing list" <development at opentox.org>
Sent: Monday, November 02, 2009 5:31 PM
Subject: Re: [OTDev] IBMC services


> 
> Dear Alex,
> 
> we tried to run some of your examples you send in your
> email. Unfortunately, we do not get any reply. The port seems to be open
> but we wait really long and nothing happens. If there something wrong on
> our side or is maybe the service down?
> 
> Thank you and regards,
> 
> Joerg
> 
> -- 
> Dipl.-Bioinf.  Joerg Wicker              phone: +49-89-289-19440
> Technische Universitaet Muenchen           fax: +49-89-289-19414
> Institut fuer Informatik/I12             email: joerg.wicker at in.tum.de
> Boltzmannstr. 3                           room: MI 01.08.039
> D-85748 Garching b. Muenchen, Germany
> http://wwwkramer.in.tum.de/wicker/
> _______________________________________________
> Development mailing list
> Development at opentox.org
> http://www.opentox.org/mailman/listinfo/development
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