Dear Alexey,

Few comments from my side, which I hope will help clarify your questions
and partners experience.

Regarding the service:
1) It is great yet another partner is becoming online :)
2) You are claiming implementation of following OpenTox resources:
feature definitions, feature, references, and algorithms.  So far the
only service running is one that retrieves feature value for specific
(hidden) compound and MNA descriptor, i.e. the one at

http://195.178.207.160:8080/OpenTox/feature/compound/{compound-id}/feature_definition/{descr_id}/

>From your email it is not clear if other services are accessible and from where.  The obvious URLs for the rest of the services are not working. 

http://195.178.207.160:8080/OpenTox/feature/
http://195.178.207.160:8080/OpenTox/feature_definition
http://195.178.207.160:8080/OpenTox/reference
http://195.178.207.160:8080/OpenTox/algorithm

http://195.178.207.160:8080/OpenTox/compound/1   - it is not clear now
how to retrieve the compound you are calculating descriptors for.

At this moment this is obviously an work in progress, therefore I expect
in next version your will be providing the claimed services. 

3) Another issue is your service return information under text/uri-list,
but the values returned are not URIs.  Therefore, you should support
different representation for the returned MNA values, rather than URI-list.

Regarding the underlying technology, I am not sure I understand your
questions completely.    Briefly, some of the partners are using java
and Restlet library and the some application server (tomcat or
similar).  The rest of the services are implemented and run with Ruby on
Rails framework. Both Java and Ruby applications can run on different
operating systems, so we are not locked into a single OS.

Could I suggest a Skype chat , with interested developers involved , so
you could get an idea what technologies are used by partners and we can
discuss what technology will best suit IBMC team?


Best regards,
Nina

 


Alexey wrote:
> Dear Joerg,
>
> At present time our server is working.
>
> We used cURL version 7.19.6 ssl and Poster (Mozilla Firefox) for
> implementation of following query:
>
> A Linux example call (command line) to retrieve a list of MNA descriptors
> for compounds would be:
>
> curl -X GET -H 'Accept:text/uri-list'
> http://195.178.207.160:8080/OpenTox/feature/compound/1/feature_definition/MN
> A/
>
> For Poster (Mozilla Firefox) using GET method you could be obtained list of
> MNA descriptors for compounds:
>
> http://195.178.207.160:8080/OpenTox/feature/compound/1/feature_definition/MN
> A/
>
> I send you print screens of Poster and cURL working.
>
> How we understand use of curl command for curl -X POST -d
> "dataset_id=http://test.server.com/input.sdf" -H 'Accept:text/xml'
> http://opentox.informatik.tu-muenchen.de:8080/OpenTox/algorithm/descriptorca
> lculation/physicochemical/CDKPhysChem activate working of XML-parser for
> descriptors calculation. Could you write, what does XML-parser initiate for
> working of XML algorithm which are located in
> http://opentox.informatik.tu-muenchen.de:8080/OpenTox/algorithm/descriptorca
> lculation/physicochemical/CDKPhysChem. Is it especial program or may be you
> use XML-server for this purpose (I mean executable module is realized in
> XML-server)? 
>
> For example, we try to realize such path: curl->php>socket>php>place on
> server or user interface
>
> Yours sincerely,
> Alexey Zakharov.
>  
>
> -----Original Message-----
> From: Poroikov V.V. [mailto:vladimir.poroikov at ibmc.msk.ru] 
> Sent: Tuesday, November 03, 2009 4:04 PM
> To: alexey.zakharov at ibmc.msk.ru; alexey.lagunin at ibmc.msk.ru
> Cc: dmitry.filimonov at ibmc.msk.ru
> Subject: Fw: [OTDev] IBMC services
>
>
> ----- Original Message ----- 
> From: "Joerg Wicker" <joerg.wicker at in.tum.de>
> To: "opentox development mailing list" <development at opentox.org>
> Sent: Monday, November 02, 2009 5:31 PM
> Subject: Re: [OTDev] IBMC services
>
>
>   
>> Dear Alex,
>>
>> we tried to run some of your examples you send in your
>> email. Unfortunately, we do not get any reply. The port seems to be open
>> but we wait really long and nothing happens. If there something wrong on
>> our side or is maybe the service down?
>>
>> Thank you and regards,
>>
>> Joerg
>>
>> -- 
>> Dipl.-Bioinf.  Joerg Wicker              phone: +49-89-289-19440
>> Technische Universitaet Muenchen           fax: +49-89-289-19414
>> Institut fuer Informatik/I12             email: joerg.wicker at in.tum.de
>> Boltzmannstr. 3                           room: MI 01.08.039
>> D-85748 Garching b. Muenchen, Germany
>> http://wwwkramer.in.tum.de/wicker/
>> _______________________________________________
>> Development mailing list
>> Development at opentox.org
>> http://www.opentox.org/mailman/listinfo/development
>>     
>>
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