[OTDev] Feature values

Nina Jeliazkova nina at acad.bg
Thu Dec 17 15:13:44 CET 2009


Dear Tobias,

I've forwarded our recent  discussion with Christoph on tuples +
proposal   in a previous mail.

Tobias Girschick wrote:
> Dear Christoph,
>
> I am not sure that I understand your question right. In your example,
> are you talking about one feature that has a :smarts, p_value:, ....?
> In this case we might have a (maybe) similar problem here, too. Because
> at the moment I don't see a way to encode (descriptor calculation)
> algorithm parameters in features. But if we generate descriptors by
> pattern mining algorithms the algorithm parameters have to be encoded in
> the feature somehow and the should be query-able to prevent double
> calculations.
>
>   
IMHO this is a different case than Christoph's.  A descriptor with
different parameters is just a different Feature and should not be
stored under the same feature URI. 

Then feature URI should have a way to denote it is calculated from the
same algorithm (ot:hasSource was introduced to link to the Algorithm ,
or Model, or Dataset).
Now we indeed have no way to include parameters in this setup.

One idea is to consider descriptor calculation algorithms as Models
(algorithm + specific parameters), and include link to the specific
Model.  (I think I've already suggested this some weeks before).

Best regards,
Nina
> Regards,
> Tobias
>
>
> On Tue, 2009-12-15 at 14:24 +0100, Christoph Helma wrote: 
>   
>> Dear Nina, All,
>>
>> I have to represent feature values as tuples (i.e. name/value pairs,
>> e.g. :smarts => "NN", :p_value => 0.97, :effect => "activating", or
>> :prediction => "active", :confidence => 0.5). For this purpose I have
>> invented the OWL Class "Tuple", and the ObjectProperty 'tuple' that can
>> be used instead of a (feature)value. Do you think that tuples should be
>> included into opentox.owl or are there any other solutions for
>> representing complex features.
>>
>> Best regards,
>> Christoph
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>>     
>
>
>   




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