[OTDev] validating web services

Wed Apr 21 07:05:22 CEST 2010

Dear Pantelis,

chung wrote:
> Dear Martin, All,
>   I have made some changes regarding the NTUA services to provide full
> compatibility with the recent changes in the Task API. I was a bit
> dubious as to whether I should deploy the new version of the services
> lest these would ruin the integration with ToxPredict. So I deployed the
> latest version of YAQP on another URI: http://opentox.ntua.gr:3003 (Note
> the different port: its 3003 instead of 3000).
>
> @Martin: Could you please try the validation services using the above
> URI? (Hope this works...). Note that there are some changes as far as
> the redirections are concerned! Let me know if you encounter any
> problems and we'll be in touch to make the services work.
>
> @Nina: Could you please check if the new services are compliant with the
> new API (status codes, response messages, RDF content etc)? Then we
> could officially switch to the new API.
>   
The task RDF is fine. 

I have tried creating a new model by following curl commands:

    nina at ambit:~$ curl -X POST -d
    "dataset_uri=http%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Fdataset%2F595%3Ffeature_uris%5B%5D%3Dhttp%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255508%26feature_uris%5B%5D%3Dhttp%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255509%26feature_uris%5B%5D%3Dhttp%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255511%26feature_uris%5B%5D%3Dhttp%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255512%26feature_uris%5B%5D%3Dhttp%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255510&prediction_feature=http%3A%2F%2Fambit.uni-plovdiv.bg%3A8080%2Fambit2%2Ffeature%2F255510"
    http://opentox.ntua.gr:3003/algorithm/mlr -vi >
    test-create-ntua-model-1.txt
    * About to connect() to opentox.ntua.gr port 3003 (#0)
    *   Trying 147.102.82.32... connected
    * Connected to opentox.ntua.gr (147.102.82.32) port 3003 (#0)
    > POST /algorithm/mlr HTTP/1.1
    > User-Agent: curl/7.18.2 (x86_64-pc-linux-gnu) libcurl/7.18.2
    OpenSSL/0.9.8g zlib/1.2.3.3 libidn/1.8 libssh2/0.18
    > Host: opentox.ntua.gr:3003
    > Accept: */*
    > Content-Length: 625
    > Content-Type: application/x-www-form-urlencoded
    >
    } [data not shown]
      % Total    % Received % Xferd  Average Speed   Time    Time    
    Time  Current
                                     Dload  Upload   Total   Spent   
    Left  Speed
    100   625    0     0    0   625      0  25051 --:--:-- --:--:--
    --:--:-- 25051< HTTP/1.1 202 The request has been accepted for
    processing, but the processing has not been completed
    < Content-Language: en, en-us
    < Content-Type: application/rdf+xml
    < Date: Wed, 21 Apr 2010 04:47:05 GMT
    < Accept-Ranges: bytes
    < Server: Restlet-Framework/2.0m7
    < Vary: Accept-Charset, Accept-Encoding, Accept-Language, Accept
    < Connection: close
    < Transfer-Encoding: chunked
    <
    { [data not shown]
    100  4390    0  3765    0   625  24513   4069 --:--:-- --:--:--
    --:--:-- 24531* Closing connection #0

    nina at ambit:~$ curl -iv
    http://opentox.ntua.gr:3003/task/acc51ac8-7872-40e1-9837-9784537a1777
    > test-query-task-1.txt
    * About to connect() to opentox.ntua.gr port 3003 (#0)
    *   Trying 147.102.82.32... connected
    * Connected to opentox.ntua.gr (147.102.82.32) port 3003 (#0)
    > GET /task/acc51ac8-7872-40e1-9837-9784537a1777 HTTP/1.1
    > User-Agent: curl/7.18.2 (x86_64-pc-linux-gnu) libcurl/7.18.2
    OpenSSL/0.9.8g zlib/1.2.3.3 libidn/1.8 libssh2/0.18
    > Host: opentox.ntua.gr:3003
    > Accept: */*
    >
    < HTTP/1.1 200 The request has succeeded
    < Content-Language: en, en-us
    < Content-Type: application/rdf+xml
    < Date: Wed, 21 Apr 2010 04:47:50 GMT
    < Accept-Ranges: bytes
    < Server: Restlet-Framework/2.0m7
    < Vary: Accept-Charset, Accept-Encoding, Accept-Language, Accept
    < Connection: close
    < Transfer-Encoding: chunked
    <
      % Total    % Received % Xferd  Average Speed   Time    Time    
    Time  Current
                                     Dload  Upload   Total   Spent   
    Left  Speed
      0     0    0     0    0     0      0      0 --:--:-- --:--:--
    --:--:--     0{ [data not shown]
    100  4063    0  4063    0     0  44055      0 --:--:-- --:--:--
    --:--:-- 99097* Closing connection #0

The outcome seems fine (200 OK result code),  but when looking into the
RDF, returned by the last command (output in the attached
test-query-task-1.txt) , the URL of the created model is not a valid one
http://opentox.ntua.gr:3003/model/0  - excerpt below, as well as full
output in the attached file.

      <rdf:Description
    rdf:about="http://opentox.ntua.gr:3003/task/acc51ac8-7872-40e1-9837-9784537a1777">
        <ot:hasStatus
    rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Completed</ot:hasStatus>
        <ot:resultURI
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.ntua.gr:3003/model/0</ot:resultURI>
        <dc:date
    rdf:datatype="http://www.w3.org/2001/XMLSchema#date">Wed Apr 21
    00:47:50 EDT 2010</dc:date>
        <dc:relation
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.org</dc:relation>
        <dc:contributor
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.org</dc:contributor>
        <dc:publisher
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.ntua.gr:3003</dc:publisher>
        <dc:creator
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.ntua.gr:3003</dc:creator>
        <dc:title
    rdf:datatype="http://www.w3.org/2001/XMLSchema#string">YAQP
    Task</dc:title>
        <rdf:type rdf:resource="http://www.opentox.org/api/1.1#Task"/>
        <dc:identifier
    rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://opentox.ntua.gr:3003/task/acc51ac8-7872-40e1-9837-9784537a1777</dc:identifie
    r>

I might be well submitting something wrong , although this is caco-2
dataset from the model we had tried to reproduce, and result codes don't
indicate possible errors.

Could you please have a look?

Best regards,
Nina
> Best regards,
> Pantelis 
>
> On Mon, 2010-04-19 at 18:29 +0200, Martin Guetlein wrote:
>   
>> Dear All,
>>
>> I created a new website that makes it easier for you to get your
>> models and the validation web service working together:
>> http://opentox.informatik.uni-freiburg.de/validation/nightly
>> This website is for developers of OT web services and shows the
>> results of a daily validation of your model web service/s. So far it
>> is only a first initial version, it will be extended further.
>>
>> To all developers: please send to me URIs of models and/or datasets to
>> extend the tests.
>>
>> Best regards,
>> Martin
>>
>>
>>     
>
>
> _______________________________________________
> Development mailing list
> Development at opentox.org
> http://www.opentox.org/mailman/listinfo/development
>   

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