[OTDev] First version of reach reporting service available

Christoph Helma helma at in-silico.ch
Fri Aug 20 16:16:20 CEST 2010


Excerpts from Martin Guetlein's message of Thu Aug 19 11:58:46 +0200 2010:
> Hello All,
> 
> the first version of the qmrf report service is available. See below for
> example curl calls. More functionality and a better documentation on the
> opentox-webpage will be available soon.
> 
> I would be happy if you could give it a try (with your own model /
> qmrf-report) and give some feedback to me.
> 
> Best regards,
> Martin
> 
> 
> create new qmrf-report from model:
> --------------------------------------------------
> curl -X POST -d model_uri=http://apps.ideaconsult.net:8080/ambit2/model/33
> http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF
> (The content is very sparse yet, will be extended soon)

Works for me.
> 
> 
> alternatively, create new qmrf-report from file:
> -----------------------------------------------------------------
> curl -X POST -T QMRF_v1.2_FishTox.xml
> http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF
> (file is available at http://ecb.jrc.ec.europa.eu/qsar/qsar-tools/qrf)
> 
Not tested
> 
> get report as qmrf-xml:
> --------------------------------
> curl -H "accept:application/qmrf-xml"
> http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF/3
> (This format can be edited with the qmrf editor at
> http://ambit.sourceforge.net/qmrf/jws/qmrfeditor.jnlp)

Works for me.
> 
> 
> update changes (made with editor) to report at web service:
> -----------------------------------------------------------------------------------
> curl -X POST -T QMRF_v1.2_FishTox.xml
> http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF/3
> 
I have updated the Authors field and it seems to be duplicated in the
xml that I get back after uploading:

     	<author number='' name='Christoph Helma' url='' contact='' id='author_7' affiliation='in silico toxicology gmbh' email='helma at in-silico.ch'/>
      <author number='' name='' url='' contact='' id='author_8' affiliation='' email=''/>
			<author number='' name='Christoph Helma' url='' contact='' id='author_7' affiliation='in silico toxicology gmbh' email='helma at in-silico.ch'/>
      <author number='' name='' url='' contact='' id='author_8' affiliation='' email=''/>

Best regards,
Christoph



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