[OTDev] First version of reach reporting service available

Martin Guetlein martin.guetlein at googlemail.com
Sat Aug 21 14:49:09 CEST 2010


On Fri, Aug 20, 2010 at 4:16 PM, Christoph Helma <helma at in-silico.ch> wrote:

> Excerpts from Martin Guetlein's message of Thu Aug 19 11:58:46 +0200 2010:
> > Hello All,
> >
> > the first version of the qmrf report service is available. See below for
> > example curl calls. More functionality and a better documentation on the
> > opentox-webpage will be available soon.
> >
> > I would be happy if you could give it a try (with your own model /
> > qmrf-report) and give some feedback to me.
> >
> > Best regards,
> > Martin
> >
> >
> > create new qmrf-report from model:
> > --------------------------------------------------
> > curl -X POST -d model_uri=
> http://apps.ideaconsult.net:8080/ambit2/model/33
> > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF
> > (The content is very sparse yet, will be extended soon)
>
> Works for me.
> >
> >
> > alternatively, create new qmrf-report from file:
> > -----------------------------------------------------------------
> > curl -X POST -T QMRF_v1.2_FishTox.xml
> > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF
> > (file is available at http://ecb.jrc.ec.europa.eu/qsar/qsar-tools/qrf)
> >
> Not tested
> >
> > get report as qmrf-xml:
> > --------------------------------
> > curl -H "accept:application/qmrf-xml"
> > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF/3
> > (This format can be edited with the qmrf editor at
> > http://ambit.sourceforge.net/qmrf/jws/qmrfeditor.jnlp)
>
> Works for me.
> >
> >
> > update changes (made with editor) to report at web service:
> >
> -----------------------------------------------------------------------------------
> > curl -X POST -T QMRF_v1.2_FishTox.xml
> > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF/3
> >
> I have updated the Authors field and it seems to be duplicated in the
> xml that I get back after uploading:
>
>        <author number='' name='Christoph Helma' url='' contact=''
> id='author_7' affiliation='in silico toxicology gmbh' email='
> helma at in-silico.ch'/>
>      <author number='' name='' url='' contact='' id='author_8'
> affiliation='' email=''/>
>                        <author number='' name='Christoph Helma' url=''
> contact='' id='author_7' affiliation='in silico toxicology gmbh' email='
> helma at in-silico.ch'/>
>      <author number='' name='' url='' contact='' id='author_8'
> affiliation='' email=''/>
>
> Best regards,
> Christoph
>


Hi Christoph,

bug fixed. Thanks for testing.

Best regards,
Martin



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-- 
Dipl-Inf. Martin Gütlein
Phone:
+49 (0)761 203 8442 (office)
+49 (0)177 623 9499 (mobile)
Email:
guetlein at informatik.uni-freiburg.de



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