[OTDev] Novel web-based tools combining chemistry informatics, biology and social networks for drug discovery
Vedrin Jeliazkov vedrin.jeliazkov at gmail.comSun Aug 22 23:32:04 CEST 2010
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Hi folks, We came across an interesting article (http://dx.doi.org/10.1016/j.drudis.2008.11.015), which happens to be freely accessible here: http://csemails.elsevier.com/DDT/jan2010/Review2.pdf Novel web-based tools combining chemistry informatics, biology and social networks for drug discovery Abstract: A convergence of different commercial and publicly accessible chemical informatics, databases and social networking tools is positioned to change the way that research collaborations are initiated, maintained and expanded, particularly in the realm of neglected diseases. A community-based platform that combines traditional drug discovery informatics with Web2.0 features in secure groups is believed to be the key to facilitating richer, instantaneous collaborations involving sensitive drug discovery data and intellectual property. Heterogeneous chemical and biological data from low-throughput or high throughput experiments are archived, mined and then selectively shared either just securely between specifically designated colleagues or openly on the Internet in standardized formats. We will illustrate several case studies for anti-malarial research enabled by this platform, which we suggest could be easily expanded more broadly for pharmaceutical research in general. Kind regards, Vedrin PS1: OT could provide more than the services, described in the article, since it is open source, while CDD is not (AFAIK). In particular, anyone could grab OT software and deploy it wherever she/he wants and sees fit, while CDD's solution bears a striking similarity to centralized platforms like Facebook and Twitter (and probably most of it's value would be concentrated in the loyal user base if it succeeds to get sufficiently popular in the scientific community). PS2: It is somehow ironic that an article in which data confidentiality and security are major topics has been made inadvertently freely accessible by it's publisher :-) ... A closer look at http://csemails.elsevier.com/DDT/jan2010/ reveals that probably the article is offered for free intentionally. However this highlights another issue -- the article is accessible only to paying customers when you follow the official references to it (e.g. DOI, etc). In an ideal world, you should always get the best offer, but apparently this goal hasn't been achieved by Elsevier yet (or is not being pursued at all)...
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