[OTDev] Techie Table

Barry Hardy barry.hardy at douglasconnect.com
Tue Sep 7 09:58:30 CEST 2010


  Re: Techie Table in Rhodes

- Might be also good to specify experience required of participants 
e.g., programming languages, and level
- I would avoid if at all possible working on installation work at the 
workshop.  You could offer virtual support pre-workshop to fix problems.
- As participants are staying on in Rhodes for a few days for the 
meeting, some of you could continue to interact and offer support as needed

Barry

Am 07.09.2010 09:00, schrieb Tobias Girschick:
> Hi Pantelis,
>
> first of all, I like the partitioning into two parts. In the first part
> participants can get a feeling for the OT API and in the second they can
> make use of it.
> Overall I guess your time estimates are very (very) optimistic. You have
> to keep in mind, that we don't know the exact programming skills of the
> participants and that that haven't worked with our - still not
> sufficiently documented - API at all.
>
> best regards,
> Tobias
>
> On Mon, 2010-09-06 at 18:22 +0300, chung wrote:
>> Hello All,
>>     I'm sending out some notes/thoughts about the Techie Table
>>
>> @All:
>>     I'm thinking of organizing the discussion and presentation in two
>> parts. In the first we are going to show how a developer can consume
>> OpenTox web services from inside a Java application using some tools of
>> ours. This will include some A&A also. Using web clients and parsers,
>> the participants will download and parse OpenTox resources such as
>> compounds, features, datasets and models and inspect them from within
>> their Java application. Exercises will include parsing of datasets and
>> conversion into weka data objects (Instances), training of various
>> models using NTUA, TUM and AMBIT algorithms (where necessary using also
>> the A&A API). So this will familiarize the participants with the direct
>> consumption of OT web services on a more advanced level than  using web
>> interfaces and a more programmatic way than using plain curl. This will
>> take about 45 minutes including discussion/questions.
>>     In the second part, I'm thinking of having the audience building an
>> OpenTox web service with some guidance. We will design and deploy a
>> clustering algorithm for the sake of getting in touch with web services
>> and having a better insight into the OpenTox API. First we will study
>> the requirements of the OT API and will formulate hypothetical curl
>> commands for how a request would look like (In a top-down approach).
>> Then we will proceed formulating an RDF representation of the algorithm
>> discussing at the same time about the structure of such a document and
>> the information that should be found therein. Jena will be used as an
>> RDF editor/parser, which will be quite useful to developers that want to
>> get involved into any contemporary project (web semantics etc). We will
>> not get into much detail as far as the storing of models is concerned
>> but briefly we'll present the underlying database tables structure. Weka
>> will be used to materialize the XMeans algorithm. The whole effort will
>> boil down to just about 500 lines of source code including the use of
>> various Java libraries such as Restlet, Weka, Jena and DeciBell.  This
>> will take about 75' and the rest of the time we will discuss about
>> various challenges a developer can take.
>>
>>    I'll be sending you a list of what should a participant have installed
>> by the end of the day. If any participants experience problems
>> installing any of the libraries/tools/programs in the list, we'll do it
>> together on the table.
>>
>> Best regards,
>> Pantelis
>>
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