On 1 April 2011 16:20, Om <ompandey at gmail.com> wrote:

> Hi Tobias,
>
> I would like to use the gSPAN modules from your source code for the
> structural clustering. I wish to integrate these steps locally (through
> netbeans project)  as I have large datasets to work on ( and our network
> connection is intermittent - so that uploads to ambit are likely to fail)
> and I also want to run the code as efficiently and natively as possible.
>
> Could you please point out which source files within the source directory
> (and dependencies) contain the code to do the above ?
>
> Also I would just like to add that I tried using the OpenTox services for
> TUM and could not get past the "The server understood the request, but is
> refusing to fulfill it" etc ... error message. I am assuming it was an A&A
> issue so i tried the following
>
> curl -i -d "username=ompandey" -d "password=*******"
> http://opensso.in-silico.ch/auth/authenticate?uri=service=openldap
>
> I got the token and tried (with and without url-encoding)
>
> curl -i -d
>
> "subjectid=AQIC5wM2LY4SfcwnbJmuQevLWTGO%2BkNqbUaqOdwH1tW0iN0%3D%40AAJTSQACMDE%3D%23"
> -d 'dataset_uri=
> http://apps.ideaconsult.net:8080/ambit2/dataset/23793?max=10'
> -d 'threshold=0.50'
>
> http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/StructuralClustering


tokens should be sent via header, not parameter , i.e.

curl -H  "subjectid:thetoken"   (not url encoded).

Hope this helps,
Nina


>
>
> but it did not work.
>
> Could you please enumerate the correct set of steps involved in getting the
> result from this algorithm?
>
> Regards
> Om
>
> On Wed, Feb 23, 2011 at 4:27 PM, Tobias Girschick <
> tobias.girschick at in.tum.de> wrote:
>
> > Hi All,
> >
> > TUM services running on
> > http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev will be down
> for
> > the next 1 or 2 hours. The non-AA secured services are still available
> at:
> >
> > http://opentox.informatik.tu-muenchen.de:8080/OpenTox-noAA
> >
> > When the OpenTox-dev services are up again, this will be the AA secured
> > version.
> >
> > best regards,
> > Tobias
> > --
> >
> > Dipl.-Bioinf. Tobias Girschick
> >
> > Technische Universität München
> > Institut für Informatik
> > Lehrstuhl I12 - Bioinformatik
> > Bolzmannstr. 3
> > 85748 Garching b. München, Germany
> >
> > Room: MI 01.09.042
> > Phone: +49 (89) 289-18002
> > Email: tobias.girschick at in.tum.de <mailto:tobias.girschick at in.tum.de>
> > Web: http://wwwkramer.in.tum.de/girschick
> >
> > _______________________________________________
> > Development mailing list
> > Development at opentox.org
> > http://www.opentox.org/mailman/listinfo/development
> >
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