Hi Vedrin,
     Thanks a lot for that. There was some problem with our services by
the way around midnight yesterday. The problem was triggered only by GET
on /bibtex/id but was enough for the whole application to hang but it's
now fixed. This resource was something I forgot to profile before
deploying the application... I'll check again the smokeping tests and
java melody tomorrow morning.

Best regards,
Pantelis

On Tue, 2011-04-12 at 23:31 +0300, Vedrin Jeliazkov wrote:

> Hi Pantelis,
> 
> Thanks a lot for this update. I've re-organised the NTUA-related
> section of our SmokePing setup and added a few more targets, while
> leaving out (for the time being) the calls that would result in
> creating new entities. You can check the results at:
> 
> http://ambit.uni-plovdiv.bg/cgi-bin/smokeping.cgi?target=NTUA
> 
> Kind regards,
> Vedrin
> 
> On 12 April 2011 19:07, chung <chvng at mail.ntua.gr> wrote:
> > Hi Vedrin, All,
> >
> >    The latest version of jaqpot3 is up and running at
> > http://opentox.ntua.gr:8080/ . I'll provide here some cURL requests
> > which Vedrin could use to update smokeping:
> >
> > 0. First acquire a token
> > export jaqpot_username=guest
> > export jaqpot_pass=guest
> > export token=`curl -X POST -k
> > 'https://opensso.in-silico.ch:443/auth/authenticate?uri=service=openldap' -d username=$jaqpot_username -d password=$jaqpot_pass`;
> > token=`echo $token | cut -c10-80`
> >
> >
> > 1. List the 1000 first bibtex entries
> > curl -H Accept:text/uri-list
> > 'http://opentox.ntua.gr:8080/bibtex?max=1000' -H subjectid:$token
> >
> > 2. List all models
> > curl -H Accept:text/uri-list http://opentox.ntua.gr:8080/model -H
> > subjectid:$token
> >
> > 3. List all tasks
> > curl -H Accept:text/uri-list http://opentox.ntua.gr:8080/task -H
> > subjectid:$token
> >
> > 4. Get the RDF representation of a task:
> > curl -H Accept:application/rdf+xml
> > http://opentox.ntua.gr:8080/task/048aa8d1-3592-4095-bf9a-d5342e538ba9 -H
> > subjectid:$token
> >
> > 5. Get the RDF representation of a model:
> > curl -X GET
> > http://opentox.ntua.gr:8080/model/092ba2bc-e7d8-4eda-8259-3789065e1d57
> > -H subjectid:$token
> >
> > 6. Train a model (requires authentication):
> > curl -X POST -d
> > dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
> > prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22202
> > http://opentox.ntua.gr:8080/algorithm/mlr -H Accept:text/uri-list -H
> > subjectid:$token
> > curl -X POST -d
> > dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
> > prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22202
> > http://opentox.ntua.gr:8080/algorithm/svm -H Accept:text/uri-list -H
> > subjectid:$token
> > curl -X POST -d
> > dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
> > prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22202
> > http://opentox.ntua.gr:8080/algorithm/fastRbfNn -H Accept:text/uri-list
> > -H subjectid:$token
> > curl -X POST -d
> > dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54 -d
> > prediction_feature=http://apps.ideaconsult.net:8080/ambit2/feature/22202
> > http://opentox.ntua.gr:8080/algorithm/scaling -H Accept:text/uri-list -H
> > subjectid:$token
> >
> > 7. Use a model for prediction:
> >
> > export
> > svmModel=http://opentox.ntua.gr:8080/model/d488d65f-322d-4af4-b847-1ed6c2dc05be
> > curl -X POST -H subjectid:$token -d
> > "dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54?max=10"
> > $svmModel -H Accept:text/uri-list
> >
> > export
> > fastRbfNnModel=http://opentox.ntua.gr:8080/model/1d34aaa8-2b8c-4c0b-a95a-8a439fcfcce1
> > curl -X POST -H subjectid:$token -d
> > "dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54?max=10"
> > $fastRbfNnModel -H Accept:text/uri-list
> >
> > export
> > mlrModel=http://opentox.ntua.gr:8080/model/d8572c7e-b453-485e-99bd-ed3772a5463b
> > curl -X POST -H subjectid:$token -d
> > "dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/54?max=10"
> > $mlrModel -H Accept:text/uri-list
> >
> >
> > 8. Create a bibliographic reference
> > curl -X POST -d "author=John Smith" -d "title=Title" -d "address=10,
> > Some Street" -d
> > "crossref=http://opentox.ntua.gr:8080/bibtex/faca253c-37fa-42e1-8d04-0a2239f84c8f" -d "annotation=some annotation" -d bibtype=Article -d "pages=1455-1489" -d "abstract=summary" -d year=2011 -d volume=10 -d number=6 -d "journal=Intern. Journal of Something" -d "series=xyz" -d "url=http://someserver.com/reference/1" -d chapter=10 -d "keywords=QSAR,web services" -d edition=first -d "isbn=89-9-4325-123-43-34" -d "issn=0-0-0-0"  http://opentox.ntua.gr:8080/bibtex -H subjectid:$token -H Accept:text/uri-list
> >
> >
> > 9. You can now access the plain text representation of the bibtex entry
> > you created:
> >
> > curl
> > 'http://opentox.ntua.gr:8080/bibtex/160fa0cb-d749-4d21-a66c-eac54d5cffc4?accept=text/plain'  -H subjectid:$token
> >
> > 10. Some statistics regarding the database are available in XML at
> > http://opentox.ntua.gr:8080/dbstats
> >
> > Best regards,
> > Pantelis
> > _______________________________________________
> > Development mailing list
> > Development at opentox.org
> > http://www.opentox.org/mailman/listinfo/development
> >
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