[OTDev] validation search functions with model
Nina Jeliazkova jeliazkova.nina at gmail.comWed Aug 24 14:19:35 CEST 2011
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Well, we have followed a linked data approach so far , not necesarily to have everything in one place , just being able to follow the links. And there is an ontology service. @Christoph, Martin - will it be possible to solve the issue by just registering the validation and reporting resources (the same way as models are registered)? Thanks, Nina On 24 August 2011 15:15, surajit ray <mr.surajit.ray at gmail.com> wrote: > Hi, > > This ties in well with my earlier idea to have a service tracking model > performance, feedback and validations all in one place. IHMO the > developer/chemo-informatics person can specify a validation service [from > a > choice of a few reliable ones], and this choice should then be stored in a > service which also collects other pertinent information about the model > like > usage statistics, client feedback etc. > > Cheers > Surajit > > On 24 August 2011 16:58, Nina Jeliazkova <jeliazkova.nina at gmail.com> > wrote: > > > Dear Christoph, > > > > On 24 August 2011 14:18, Christoph Helma <helma at in-silico.ch> wrote: > > > > > Dear Nina, > > > > > > I am not sure if Martin has replied already: > > > > > > > > > > > > > > > http://opentox.informatik.uni-freiburg.de/validation is the "official" > > > validation service for all partners. For better load balancing we > deploy > > > additional services, e.g. webservices.in-silico.ch/validation for > > > toxcreate.org, > > > ot-test.in-silico.ch/validation for ot-test.in-silico.ch > > > and most recently lazar-services.in-silico.ch/validation for > > > lazar.in-silico.ch. > > > > > > > Thank you. As ToxPredict operates with arbitrary model URIs, what we the > > best way to find out where the validation (and reporting ) resources for > > particular model resides ? The question concerns not only models, built > by > > ToxCreate , but any models, registered in the ontology service (and thus > > used by ToxPredict). > > > > Perhaps we should agree on some linking between model , validation and > > reports, if these don't exist already? > > > > Best regards, > > Nina > > > > > > > > > > > > Best regards, > > > Christoph > > > > > > > > > On Sat, 20 Aug 2011 08:05:39 +0300, Nina Jeliazkova < > > > jeliazkova.nina at gmail.com> wrote: > > > > Hi Martin, > > > > > > > > Thank you, Toxpredict issue tracker is now updated: > > > > > > > > > > https://sourceforge.net/tracker/?func=detail&aid=3394883&group_id=191756&atid=938657 > > > > > > > > I realized there are more than one validation service, e.g. those > used > > > > by ToxCreate are different form > > > > http://opentox.informatik.uni-freiburg.de/validation. Given a model > > > > URI, what would be the best way to find which validation service to > > > > use? > > > > > > > > Best regards, > > > > Nina > > > > > > > > On 15 August 2011 11:12, Martin Guetlein < > > martin.guetlein at googlemail.com> > > > wrote: > > > > > Hi Nina, All, > > > > > > > > > > as discussed with Nina in Munich, the validation now supports two > new > > > search > > > > > functions: > > > > > > > > > > Search crossvalidations with model, example: > > > > > > > > > > > http://opentox.informatik.uni-freiburg.de/validation/crossvalidation?model=http://opentox.informatik.uni-freiburg.de/model/189 > > > > > This returns all crossvalidations that have been performed with the > > > > > corresponding algorithm and trainingDataset of the model. > > > > > > > > > > Serach qmrf reports with model, example: > > > > > > > > > > > http://opentox.informatik.uni-freiburg.de/validation/reach_report/QMRF?model=http://opentox.informatik.uni-freiburg.de/model/189 > > > > > This returns all qmrf reports created for the particular model. > > > > > > > > > > Best regards, > > > > > Martin > > > > > > > > > > > > > > > -- > > > > > Dipl-Inf. Martin Gütlein > > > > > Phone: > > > > > +49 (0)761 203 7633 (office) > > > > > +49 (0)177 623 9499 (mobile) > > > > > Email: > > > > > guetlein at informatik.uni-freiburg.de > > > > > > > > > _______________________________________________ > > > > Development mailing list > > > > Development at opentox.org > > > > http://www.opentox.org/mailman/listinfo/development > > > > > _______________________________________________ > > Development mailing list > > Development at opentox.org > > http://www.opentox.org/mailman/listinfo/development > > > > > > -- > Surajit Ray > Partner > www.rareindianart.com > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development >
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