[OTDev] PubChem PUG REST

Nina Jeliazkova jeliazkova.nina at gmail.com
Mon Apr 30 13:52:37 CEST 2012


Dear Paul,

Thank you!

PubChem depiction is now added to the comparison page
http://apps.ideaconsult.net:8080/ambit2/depict?search=C1%3DCC%3DC2C%28%3DC1%29C%3DCC%28%3DO%29O2


Best regards,
Nina

On 27 April 2012 18:36, Thiessen, Paul (NIH/NLM/NCBI) [E] <
thiessen at ncbi.nlm.nih.gov> wrote:

> I have added image (PNG) as an output type, e.g.:****
>
> ** **
>
> http://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/smiles/c1ccccc1/PNG****
>
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>
> … though it’s much faster if you go by CID:****
>
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>
> http://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/241/PNG****
>
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>
> … or even name:****
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>
> http://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/benzene/PNG****
>
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> Hope this helps,****
>
> ** **
>
> ** **
>
> - Paul****
>
> ** **
>
> --****
>
> ** **
>
> Dr. Paul A. Thiessen****
>
> NCBI / NLM / NIH****
>
> Bldg. 38A, Room 8N805****
>
> 8600 Rockville Pike, Bethesda, MD 20894****
>
> ** **
>
> 301-435-5892****
>
> *thiessen at ncbi.nlm.nih.gov*****
>
> ** **
>
> *From:* Nina Jeliazkova [mailto:jeliazkova.nina at gmail.com]
> *Sent:* Thursday, April 26, 2012 3:04 AM
> *To:* opentox development mailing list
> *Cc:* barry.hardy at douglasconnect.com; Thiessen, Paul (NIH/NLM/NCBI) [E]
> *Subject:* Re: [OTDev] PubChem PUG REST****
>
> ** **
>
> Hi Evan,****
>
> ** **
>
> Thank you, great news!****
>
> ** **
>
> I had a brief look, looking to add a 2D depiction directly generated by
> PubChem to the comparison page here****
>
> http://apps.ideaconsult.net:8080/ambit2/depict?search=c1ccccc1 ****
>
> ** **
>
> Any chance to add an image as one of the output representations?  ****
>
> ** **
>
> Best regards,****
>
> Nina****
>
> On 25 April 2012 17:08, Bolton, Evan (NIH/NLM/NCBI) [E] <
> bolton at ncbi.nlm.nih.gov> wrote:****
>
> Hi Barry (and OpenTox devlopers)!
>
> I hope this message finds you well.  I thought you may be interested to
> know that PubChem just released a RESTful interface.  It may help you
> streamline various aspects of fetching data from PubChem.
>
> Enjoy!
>
>
> Best,
> Evan
>
> --
>
> A new RESTful web interface to PubChem data and services (PUG REST) is
> released in beta form.  Documentation and examples are available at:
>    http://pubchem.ncbi.nlm.nih.gov/pug_rest/
>
> --
>
> Evan Bolton, Ph.D.
> Associate Investigator
> National Center for Biotechnology Information
> Bldg. 38A, Room 8S810
> National Institutes of Health
> 8600 Rockville Pike, Bethesda, MD  20894
>
> Phone:  301-451-1811
> Fax:    301-480-4559
> Email:  bolton at ncbi.nlm.nih.gov<mailto:bolton at ncbi.nlm.nih.gov>
>
> _______________________________________________
> Development mailing list
> Development at opentox.org
> http://www.opentox.org/mailman/listinfo/development****
>
> ** **
>



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