On Tue, Dec 22, 2009 at 6:33 PM, Egon Willighagen
<egon.willighagen at gmail.com> wrote:
>  var service = "http://ambit.uni-plovdiv.bg:8080/ambit2/";
>  datasets = opentox.listDataSets(service);

ui.open(
  opentox.downloadDataSetAsMDLSDfile(
    "http://ambit.uni-plovdiv.bg:8080/ambit2/",
     1,
     "/OpenTox/ambit1.sdf"
  )
)

Downloads data set "1" as MDL SD file and opens it in the Bioclipse
molecules table (which scales to at least 1GB).

I have uploaded a script to download *all* data sets on a OpenTox node
to MyExperiment:

http://www.myexperiment.org/workflows/1008

Greetings and a happy holidays,

Egon

-- 
Post-doc @ Uppsala University
Homepage: http://egonw.github.com/
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers