[OTDev] Is OpenTox service registering into an ontology service? Which one?
Nina Jeliazkova jeliazkova.nina at gmail.comTue Oct 19 17:09:53 CEST 2010
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Hi, On 19 October 2010 17:37, Egon Willighagen <egon.willighagen at gmail.com>wrote: > Hi Tobias, > > On Tue, Oct 19, 2010 at 4:18 PM, Tobias Girschick > <tobias.girschick at in.tum.de> wrote: > > I am not sure I get the whole thing. Just to clarify. If I issue a GET > > on, e.g., TUMserver/algorithm/CDK/sparqlendpoint the result would be the > > URI of all ontology servers the algorithm is registered with? > > My practical use case is the following... I know about a particular > OpenTox API server (the REST one), but for some things I rather query > the SPARQL end point (a ontology server?), instead of cherry picking > via the REST interface, which would be inefficient... > > In particularly, it's much easier to query all all ot:Algorithm's that > bo:instanceOf a bo:MolecularDescriptor, than iterating over all > ot:Algorithm's returned by the /algorithm/ REST point... > We could introduce search facilities for this kind of queries directly via the REST interface ... but this will not solve the case when the query is over multiple servers. > > This particularly becomes significant if there are only a few ontology > servers that cover many OpenTox API servers... > > So, given I know a OpenTox API server with the REST API, I would like > to know indeed what ontology server (SPARQL end point) knows about the > REST server... I'm happy with one SPARQL end point, but fine with a > exhaustive list of where the REST services have been registered... > > So, from the ontology server it is clear what the REST servers are, > but I like to be able to go the other way too... > > I think the most difficult part will be ensuring the list, provided by the services and the information behind sparql endpoints to be the same. If we don't need 100% consistency all the time (after all there are broken links all over the internet) then the implementation might be as easy as providing fixed URL of a preferred ontology service. Nina > Egon > > -- > Dr E.L. Willighagen > Postdoctoral Research Associate > University of Cambridge > Homepage: http://egonw.github.com/ > LinkedIn: http://se.linkedin.com/in/egonw > Blog: http://chem-bla-ics.blogspot.com/ > PubList: http://www.citeulike.org/user/egonw/tag/papers > _______________________________________________ > Development mailing list > Development at opentox.org > http://www.opentox.org/mailman/listinfo/development >
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