[OTDev] Fwd: Re: Your contribution to the Toxicology Ontology Roadmap

Nina Jeliazkova jeliazkova.nina at gmail.com
Tue Feb 22 07:43:28 CET 2011


On 22 February 2011 00:05, Barry Hardy <barry.hardy at douglasconnect.com> wrote:
> Was discussing this topic with Ola and we both agreed we should open it up
> for discussion to OpenTox developers.  Your feedback to Ola very welcome!
>
> Barry
>
>
> On 20 feb 2011, at 19.18, Barry Hardy wrote:
>
>>  Thanks Ola.
>>
>>  I had a thought/question - you/Egon made initial progress on getting
>>  OpenTox services talking to Bioclipse client; what about the reverse
>>  problem: what would be needed for data, algs, models in Bioclipse to
>>  talk with OpenTox?
>
> Hi,
>
> Me and Lars at AZ thought about it too and agreed it would be nice project.
> However I think it requires some work, but I don´t know the status of the
> latest OpenTox frameworks for publishing models online. Are there any SDKs
> available for this? The AMBIT server seems more a proof-of-concept than an
> actual framework to use (needs to be recompiled for adding services).
> ToxOtis is more for clients if I understand it correctly. Does it exist some
> thing like SADI has for building services
> (http://sadiframework.org/content/getting-involved/)? A plugin for Protege
> or Java service skeleton would be very nice to have...?The best way would be
> if it would be possible to drop services into a container (such as copying a
> WAR file into tomcat) and the application server would set up the rest for
> you. If nothing like this exist then I propose a solution based on OSGi for
> dynamically adding models to a running server instance. Maybe you can
> elaborate on the current status of things?
>

There is an initial implementation of such a skeleton at

https://ambit.svn.sourceforge.net/svnroot/ambit/branches/opentox/opentox-demoserver

Not completed though.

If we decided this is a priority, it needs only few touches to be
completed as a skeleton code.

Regards,
Nina

> Cheers,
>
> /Ola
>
>
>
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