Hi Tobias,

I would like to use the gSPAN modules from your source code for the
structural clustering. I wish to integrate these steps locally (through
netbeans project)  as I have large datasets to work on ( and our network
connection is intermittent - so that uploads to ambit are likely to fail)
and I also want to run the code as efficiently and natively as possible.

Could you please point out which source files within the source directory
(and dependencies) contain the code to do the above ?

Also I would just like to add that I tried using the OpenTox services for
TUM and could not get past the "The server understood the request, but is
refusing to fulfill it" etc ... error message. I am assuming it was an A&A
issue so i tried the following

curl -i -d "username=ompandey" -d "password=*******"
http://opensso.in-silico.ch/auth/authenticate?uri=service=openldap

I got the token and tried (with and without url-encoding)

curl -i -d
"subjectid=AQIC5wM2LY4SfcwnbJmuQevLWTGO%2BkNqbUaqOdwH1tW0iN0%3D%40AAJTSQACMDE%3D%23"
-d 'dataset_uri=http://apps.ideaconsult.net:8080/ambit2/dataset/23793?max=10'
-d 'threshold=0.50'
http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev/algorithm/StructuralClustering

but it did not work.

Could you please enumerate the correct set of steps involved in getting the
result from this algorithm?

Regards
Om

On Wed, Feb 23, 2011 at 4:27 PM, Tobias Girschick <
tobias.girschick at in.tum.de> wrote:

> Hi All,
>
> TUM services running on
> http://opentox.informatik.tu-muenchen.de:8080/OpenTox-dev will be down for
> the next 1 or 2 hours. The non-AA secured services are still available at:
>
> http://opentox.informatik.tu-muenchen.de:8080/OpenTox-noAA
>
> When the OpenTox-dev services are up again, this will be the AA secured
> version.
>
> best regards,
> Tobias
> --
>
> Dipl.-Bioinf. Tobias Girschick
>
> Technische Universität München
> Institut für Informatik
> Lehrstuhl I12 - Bioinformatik
> Bolzmannstr. 3
> 85748 Garching b. München, Germany
>
> Room: MI 01.09.042
> Phone: +49 (89) 289-18002
> Email: tobias.girschick at in.tum.de <mailto:tobias.girschick at in.tum.de>
> Web: http://wwwkramer.in.tum.de/girschick
>
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